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Selected Publications

Selected Publications

He L, Zhang Q, Zhou Y, Huang, Y. Optogenetic approaches to control calcium entry in non-excitable cells. Calcium Entry Channels in Non-Excitable CellsMethods in Signal Transduction Series. CRC Press, 2016.

Basanta-Sanchez M, Wang R, Liu Z, Ye X, Agris P, Li M, Shi X, Agris P, Zhou Y, Huang Y and Sheng J. TET1-mediated oxidation of 5-formylcytosine (5fC) to 5-carboxycytosine (5caC) in RNA. ChemBioChem, 2017 Jan 3;18(1):72-76.

Zhang X, Su J, Jeong M, Ko M, Huang Y, Park H, Guzman A, Lei Y, Huang Y, Rao A, Li W, Goodell M. DNMT3A and TET2 compete and cooperate to repress lineage-specific factors in hematopoietic stem cells. Nature Genetics, 2016 Sep;48(9):1014-23. 

Huang Y, Chavez L, Xing C, Wang X, Pastor WA, Kang J, Zepeda-Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1361-6.

Chavez L, Huang Y, Luong K, Agarwal S, Iyer LM, Pastor WA, Hench VK, Frazier-Bowers SA, Korol E, Liu S, Tahiliani M, Wang Y, Clark TA, Korlach J, Pukkila PJ, Aravind L, Rao A. Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP proteins in Coprinopsis cinerea. Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):E5149-58.

Huang Y, Rao A. Connections between TET proteins and aberrant DNA modification in cancer. Trends in Genetics. 2014 Oct;30(10):464-74.

Huang Y, Pastor WA, Zepeda-Martinez A. J, Anjana Rao. The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine. Nature Protoc. 2012 Oct;7(10):1897-908.

Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature. 2011 May 19;473(7347):394-7.

Ko M, Huang Y, Jankowska AM,  Pape UJ, Tahiliani M, Bandukwala HS, An J, Lamperti ED, Koh KP, Ganetzky R, Liu XS, Aravind L, Agarwal S, Maciejewski JP, Rao A. Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature. 2010 Dec 9;468(7325):839-43.

Huang Y, Pastor WA, Shen Y, Tahiliani M, Liu DR, Rao A. The behavior of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One. 2010 Jan 26;5(1):e8888.

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